Publications

Blumenthal, D. B., Lucchetta, M., Kleist, L., Fekete, S. P., List, M., & Schaefer, M. H. (2024). Emergence of power law distributions in protein-protein interaction networks through study bias. eLife, 13, e99951. https://doi.org/10.7554/eLife.99951

Albrecht, E., Pelz, K., Gress, A., Trung, H. N., Kalinina, O. V., Kacprowski, T., Baumbach, J., List, M. & Tsoy, O. (2025). DIGGER 2.0: digging into the functional impact of differential splicing on human and mouse disorders. Nucleic Acids Research, 53(W1), W245-W252. https://doi.org/10.1093/nar/gkaf384
Meyerhöfer, N., Krogan, N. J., Polacco, B. J., & Blumenthal, D. B. (2025). Inference of differential kinase interaction networks with KINference. Bioinformatics, 41(7), btaf349. https://doi.org/10.1093/bioinformatics/btaf349

Bernett, J., Spannagl, A., Ås, J., List, M., & Blumenthal, D. B. (2026). Are You Learning Biological Signal or Shortcuts? Auditing and Mitigating Bias in Protein-Protein Interaction Datasets. arXiv preprint arXiv:2609.10193. https://doi.org/10.48550/arXiv.2609.10193
Ås, J., Pelz, K., Bernett, J., Battini, F., List, M., Blumenthal, D. B., & Schaefer, M. H. (2026). Towards reconstruction of the human interactome from positive and negative experimental evidence. bioRxiv preprint 2026.09.09.750397. https://doi.org/10.64898/2026.09.09.750397
Ås, J., Pelz, K., Gonçalves-Kulik, M., Bernett, J., Battini, F., Cihan, M., More, P., List, M., Blumenthal, D. B., Schaefer, M. H. & Andrade-Navarro, M. HIPPIE 3.0: expanding experimental evidence for mining and predicting protein interaction networks. Under review.