HIPPIE v3.0 is online with new data, high-confidence negatives, machine learning-ready splits, and a new look. Check it out at https://hippie-db.net/! HIPPIE now contains ~1.2 million experimentally supported PPIs, including…
Towards reconstruction of the human interactome from positive and negative experimental evidence is now available at bioRxiv at https://doi.org/10.64898/2026.09.09.750397. We introduce a method to derive high-confidence interacting and, more importantly,…
Are You Learning Biological Signal or Shortcuts? Auditing and Mitigating Bias in Protein-Protein Interaction Datasets is now available at arXiv at https://doi.org/10.48550/arXiv.2609.10193. We systematically characterize both reported and, to our…
